Upgrading Cert-Manager

Rancher is compatible with the API version cert-manager.io/v1 and was last tested with cert-manager version v1.13.1.

Rancher uses cert-manager to automatically generate and renew TLS certificates for HA deployments of Rancher. As of Fall 2019, three important changes to cert-manager are set to occur that you need to take action on if you have an HA deployment of Rancher:

Let’s Encrypt will be blocking cert-manager instances older than 0.8.0 starting November 1st 2019.
Cert-manager is deprecating and replacing the certificate.spec.acme.solvers field. This change has no exact deadline.
Cert-manager is deprecating v1alpha1 API and replacing its API group

To address these changes, this guide will do two things:

Document the procedure for upgrading cert-manager
Explain the cert-manager API changes and link to cert-manager’s official documentation for migrating your data

Important:

If you are upgrading cert-manager to the latest version from a version older than 1.5, follow the steps in Option C below to do so. Note that you do not need to reinstall Rancher to perform this upgrade.

Upgrade Cert-Manager

The namespace used in these instructions depends on the namespace cert-manager is currently installed in. If it is in kube-system use that in the instructions below. You can verify by running kubectl get pods --all-namespaces and checking which namespace the cert-manager-* pods are listed in. Do not change the namespace cert-manager is running in or this can cause issues.

In order to upgrade cert-manager, follow these instructions:

Option A: Upgrade cert-manager with Internet Access

Click to expand

Back up existing resources as a precaution

 kubectl get -o yaml --all-namespaces \
 issuer,clusterissuer,certificates,certificaterequests > cert-manager-backup.yaml

Important:

If you are upgrading from a version older than 0.11.0, Update the apiVersion on all your backed up resources from certmanager.k8s.io/v1alpha1 to cert-manager.io/v1alpha2. If you use any cert-manager annotations on any of your other resources, you will need to update them to reflect the new API group. For details, refer to the documentation on additional annotation changes.

Uninstall existing deployment

 helm uninstall cert-manager

Delete the CustomResourceDefinition using the link to the version vX.Y.Z you installed

 kubectl delete -f https://github.com/cert-manager/cert-manager/releases/download/vX.Y.Z/cert-manager.crds.yaml

Install the CustomResourceDefinition resources separately

 kubectl apply --validate=false -f https://github.com/cert-manager/cert-manager/releases/download/vX.Y.Z/cert-manager.crds.yaml

If you are running Kubernetes v1.15 or below, you will need to add the --validate=false flag to your kubectl apply command above. Otherwise, you will receive a validation error relating to the x-kubernetes-preserve-unknown-fields field in cert-manager’s CustomResourceDefinition resources. This is a benign error and occurs due to the way kubectl performs resource validation.

Create the namespace for cert-manager if needed
```
 kubectl create namespace cert-manager
```

Add the Jetstack Helm repository

 helm repo add jetstack https://charts.jetstack.io

Update your local Helm chart repository cache
```
 helm repo update
```

Install the new version of cert-manager

 helm install \
   cert-manager jetstack/cert-manager \
   --namespace cert-manager

Restore back up resources

 kubectl apply -f cert-manager-backup.yaml

Option B: Upgrade cert-manager in an Air-Gapped Environment

Click to expand

=== Prerequisites

Before you can perform the upgrade, you must prepare your air gapped environment by adding the necessary container images to your private registry and downloading or rendering the required Kubernetes manifest files.

Follow the guide to Prepare your Private Registry with the images needed for the upgrade.
From a system connected to the internet, add the cert-manager repo to Helm
```
 helm repo add jetstack https://charts.jetstack.io
 helm repo update
```
Fetch the latest cert-manager chart available from the Helm chart repository.
```
 helm fetch jetstack/cert-manager
```

Render the cert manager template with the options you would like to use to install the chart. Remember to set the image.repository option to pull the image from your private registry. This will create a cert-manager directory with the Kubernetes manifest files.

The Helm 3 command is as follows:

 helm template cert-manager ./cert-manager-v0.12.0.tgz --output-dir . \
 --namespace cert-manager \
 --set image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-controller
 --set webhook.image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-webhook
 --set cainjector.image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-cainjector

Helm v2 support is deprecated as of the Rancher v2.7 line and will be removed in Rancher v2.9.

The Helm 2 command is as follows:

 helm template ./cert-manager-v0.12.0.tgz --output-dir . \
 --name cert-manager --namespace cert-manager \
 --set image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-controller
 --set webhook.image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-webhook
 --set cainjector.image.repository=<REGISTRY.YOURDOMAIN.COM:PORT>/quay.io/jetstack/cert-manager-cainjector

Download the required CRD file for cert-manager (old and new)

 curl -L -o cert-manager-crd.yaml https://raw.githubusercontent.com/cert-manager/cert-manager/release-0.12/deploy/manifests/00-crds.yaml
 curl -L -o cert-manager/cert-manager-crd-old.yaml https://raw.githubusercontent.com/cert-manager/cert-manager/release-X.Y/deploy/manifests/00-crds.yaml

=== Install cert-manager

Back up existing resources as a precaution

 kubectl get -o yaml --all-namespaces \
 issuer,clusterissuer,certificates,certificaterequests > cert-manager-backup.yaml

Important:

Delete the existing cert-manager installation

 kubectl -n cert-manager \
 delete deployment,sa,clusterrole,clusterrolebinding \
 -l 'app=cert-manager' -l 'chart=cert-manager-v0.5.2'

Delete the CustomResourceDefinition using the link to the version vX.Y you installed

 kubectl delete -f cert-manager/cert-manager-crd-old.yaml

Install the CustomResourceDefinition resources separately

 kubectl apply -f cert-manager/cert-manager-crd.yaml

Important:

Create the namespace for cert-manager
```
 kubectl create namespace cert-manager
```

Install cert-manager

 kubectl -n cert-manager apply -R -f ./cert-manager

Restore back up resources

 kubectl apply -f cert-manager-backup.yaml

Option C: Upgrade cert-manager from Versions 1.5 and Below

Click to expand

Previously, in order to upgrade cert-manager from an older version, an uninstall and reinstall of Rancher was recommended. Using the method below, you may upgrade cert-manager without those additional steps in order to better preserve your production environment:

Install cmctl, the cert-manager CLI tool, using the installation guide.
Ensure that any cert-manager custom resources that may have been stored in etcd at a deprecated API version get migrated to v1:
```
 cmctl upgrade migrate-api-version
```
Refer to the API version migration docs for more information. Please also see the docs to upgrade from 1.5 to 1.6 and the docs to upgrade from 1.6. to 1.7 if needed.
Upgrade cert-manager to v1.7.1 with a normal helm upgrade. You may go directly from version 1.5 to 1.7 if desired.
Follow the Helm tutorial to update the API version of a release manifest. The chart release name is release_name=rancher and the release namespace is release_namespace=cattle-system.
In the decoded file, search for cert-manager.io/v1beta1 and replace it with cert-manager.io/v1.
Upgrade Rancher normally with helm upgrade.

Verify the Deployment

Once you’ve installed cert-manager, you can verify it is deployed correctly by checking the kube-system namespace for running pods:

kubectl get pods --namespace cert-manager

NAME                                       READY   STATUS    RESTARTS   AGE
cert-manager-5c6866597-zw7kh               1/1     Running   0          2m
cert-manager-cainjector-577f6d9fd7-tr77l   1/1     Running   0          2m
cert-manager-webhook-787858fcdb-nlzsq      1/1     Running   0          2m

Cert-Manager API change and data migration

Rancher now supports cert-manager versions 1.6.2 and 1.7.1. We recommend v1.7.x because v 1.6.x will reach end-of-life on March 30, 2022. To read more, see the cert-manager docs. For instructions on upgrading cert-manager from version 1.5 to 1.6, see the upstream cert-manager documentation here. For instructions on upgrading cert-manager from version 1.6 to 1.7, see the upstream cert-manager documentation here.

Cert-manager has deprecated the use of the certificate.spec.acme.solvers field and will drop support for it completely in an upcoming release.

Per the cert-manager documentation, a new format for configuring ACME certificate resources was introduced in v0.8. Specifically, the challenge solver configuration field was moved. Both the old format and new are supported as of v0.9, but support for the old format will be dropped in an upcoming release of cert-manager. The cert-manager documentation strongly recommends that after upgrading you update your ACME Issuer and Certificate resources to the new format.

Details about the change and migration instructions can be found in the cert-manager v0.7 to v0.8 upgrade instructions.

The v0.11 release marks the removal of the v1alpha1 API that was used in previous versions of cert-manager, as well as our API group changing to be cert-manager.io instead of certmanager.k8s.io.

We have also removed support for the old configuration format that was deprecated in the v0.8 release. This means you must transition to using the new solvers style configuration format for your ACME issuers before upgrading to v0.11. For more information, see the upgrading to v0.8 guide.

Details about the change and migration instructions can be found in the cert-manager v0.10 to v0.11 upgrade instructions.

More info about cert-manager upgrade information.